Shahab, libgsl is included with the freesurfer distribution, and a path is setup to point to it when the freesurfer setup script is 'sourced'. What is displayed when you type:
source $FREESURFER_HOME/SetUpFreeSurfer.csh GSL_DIR should be one of the lines. Switching to suse should not be a problem. Nick On Sun, 2006-08-06 at 19:16 -0700, Shahabuddin Ansari wrote: > Hello, > > I am having problem in running the following command: > > recon-all -i 2996926_02.img -s 2996926_02 > > I used to run the command before without any problem. Recently my > linux has been updated to suse version, would that be a source of > problem. The console display the following error: > > INFO: SUBJECTS_DIR is /ensc/IMAGE/opt/FREESURFER/subjects > Actual FREESURFER_HOME /ensc/IMAGE/opt/FREESURFER > Linux ilpc5 2.6.13-15.10-bigsmp #1 SMP Fri May 12 16:36:41 UTC 2006 > i686 i686 i386 GNU/Linux > mri_convert: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mri_convert: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mri_normalize: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mri_watershed: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mri_segment: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mri_fill: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mri_tessellate: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mris_smooth: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mris_inflate: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mris_sphere: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mris_fix_topology: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mris_euler_number: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mris_make_surfaces: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mris_register: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mrisp_paint: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > mri_label2label: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mri_em_register: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mri_ca_normalize: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mri_ca_register: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > mri_ca_label: error while loading shared libraries: libgsl.so.0: > cannot open shared object file: No such file or directory > /ensc/IMAGE/opt/FREESURFER/subjects/2996926_02 > mri_convert > /ensc/IMAGE4/PROJECTS/HD_AYLWARD/DATA/PATIENTDATA/SHAHAB/2996926_02/2996926_02.img > /ensc/IMAGE/opt/FREESURFER/subjects/2996926_02/mri/orig/001.mgz > mri_convert: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory > Linux ilpc5 2.6.13-15.10-bigsmp #1 SMP Fri May 12 16:36:41 UTC 2006 > i686 i686 i386 GNU/Linux > recon-all exited with ERRORS at Sun Aug 6 19:08:34 PDT 2006 > > Shahab > > > ______________________________________________________________________ > Do you Yahoo!? > Everyone is raving about the all-new Yahoo! Mail Beta. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
