Ah, yes, that one was for linux. I've copied a mac version there now
(has .mac extension).
doug
Frederick Klauschen wrote:
Hi Doug,
I am running Freesurfer on MacOsX Darwin. The command
as you suggested:
mri_vol2vol --targ rawavg.mgz --mov orig.mgz --reg
reg.dat --o orig-in-rawavg.mgz
using the mri_vol2vol version that came with FS I get
the message: ERROR: Option --targ unknown
using the mri_vol2vol from the link you provided
results in: Exec format error. Binary file not
executable.
Probably, that is a version compiled for x86 and not
Mac?
Thanks for your help,
Frederick
--- Doug Greve <[EMAIL PROTECTED]> wrote:
This should do it:
tkregister2 --targ rawavg.mgz --mov orig.mgz --reg
reg.dat --noedit
mri_vol2vol --targ rawavg.mgz --mov orig.mgz --reg
reg.dat --o
orig-in-rawavg.mgz
If this does not work with your version of vol2vol,
then use the one here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_vol2vol
Frederick Klauschen wrote:
Hi,
I have to bring up an issue again which we had some
discussion about before, but which we haven't yet
found
a satisfying solution. I would like pose my
question a
little more precisely again:
1) I have a dataset that is in 181x217x181
coordinates.
2) I am processing it as follows:
> mri_convert name.img name/mri/orig/001.mgz
> recon-all -motioncor -subjid name
3) after step 2, the resulting dataset is somehow
transformed to a 256x256x256 dataset, i. e. the
181x217x181 is embedded into the 256^3 array:
it is rotated and the origin in 181x217x181 is not
the
origin in the 256x256x256 array.
4) Since I would like to do a voxelwise comparison
between the recon-all result and my initial dataset
1),
I need to backtransform the result into the
181x217x181 coordinates (and of course, the
backtransformation should be the exact inverse of
the
transformation in 2). I haven't found any info
about
how this transformation is done by FS, mri_info
does
not provide it.
Thanks,
Frederick
__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the
steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around
http://mail.yahoo.com
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
|
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
