Sure, my command would look something like this:
mris_anatomical_stats -b average_subject lh white -l lh.mylabel
Works on individual subjects, but not on the averaged one.
The latter was created with
make_average_subject --subjects STRU_1 STRU_2 [...] --out average_subject
Thanks for your help,
Johannes
Doug Greve schrieb:
The problem is that this is being done an the average subject, which
does not have a wm.mgz file. Should be easy to fix. Johannes, can you
send your cmd line?
doug
Nick Schmansky wrote:
Johannes,
wm.mgz is produced in the -autorecon2 stage of recon-all.
A handy table to consult is:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
or
http://grahamwideman.com/gw/brain/fs/fsunderstanding2006/processvsdata2006.htm
Nick
On Tue, 2006-10-31 at 11:49 +0000, Johannes Klein wrote:
Hi everyone,
I'm trying to calculate surface areas for some labels I've drawn on an
averaged subject created with mrake_average_surface, and
mris_anatomical_stats seems the way to go.
Unfortunately, it needs a file called wm.mgz, which doesn't exist for my
averaged subject. The mri subdir contains T1, brain, mni305.cor and
orig.mgz, but no wm.mgz. Is there a way to create this file from the
data I've got?
Thanks for your help,
Johannes
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MGH-NMR Center
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