Sebastian, Sorry for the oversight. The change to recon-all, as you have indicated, has been made to our source, and will appear in the next release.
Nick On Tue, 2006-12-12 at 02:54 +0100, Sebastian Moeller wrote: > Hi Doug, hi list, > > recently you implemented a version of mri_nu_correct.mni for me that > allows for better settings for surface coil recordings. I dragged your > change from 3.0.3 into 3.0.4 and just now realised, that it did not do > anything ;), as the recon-all script in 3.0.4 does not process xopts > for mri_nu_correct.mni. I guess in 3.0.3 I used the hacked version of > nu_correct to hide the fact that recon-all dropped the xopts on the > floor, oh my. Anyway recon-all of 3.0.4 only requires the following two > edits: > line 520 insert: > set xopts = `fsr-getxopts mri_nu_correct.mni $XOptsFile`; > and then replace the original line 521, now line 522 with the following: > --o nu.mgz --n $NuIterations $xopts) > (basically this adds "$xopts to the creation of cmd"). > then it works like it expected. > > Thanks for all the tools & the support > Sebastian > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
