I have a subject that has gotten stuck on the CA Normalize step. I have
tried running it several times and it always gets stuck in the same place,
running away for days if I let it, using 99.9% of the CPU. We are running
RH4-x86_64-R302.
Is this something that has been observed / dealt with before?
This is the screen output for the CA Normalize step up to the point of
getting stuck:
#--------------------------------------
[EMAIL PROTECTED] CA Normalize Fri Jan 5 11:02:19 PST 2007
/space/emc1/4/data/MMILDB/ADNI/Containers/FREESURFERRECON_005_S_0448_20060504.085355_1/mri
mri_ca_normalize -mask brainmask.mgz nu.mgz
/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R302/average/RB_all_2006-02-15.gca
transforms/talairach.lta norm.mgz
using MR volume brainmask.mgz to mask input volume...
reading 1 input volumes
reading atlas from
'/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R302/average/RB_all_2006-02-15.gca'...
setting gca type = Normal gca type
reading transform from 'transforms/talairach.lta'...
INFO: compute sample coordinates transform
1.405 -0.358 0.038 35.157;
0.193 0.687 -0.595 80.138;
0.176 0.895 1.062 -269.933;
0.000 0.000 0.000 1.000;
INFO: transform used
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