Nick, The files were acquired axially(120 slices) on a GE scanner. These scans are a couple of years old. I should also inform you that I converted the orginal 120 slices into afni brik format (afni was able to read them) and then used mri_convert to convert the BRIK to cor. Freesurfer then used this cor to run the recon-all pipeline.
The original files could not be read by Freesurfer which is why I did that. Also, this may be obvious to you but cannot the contrast be simply changed by Freesurfer. In tkmedit, the brightness and contrast can be adjusted so isn't there a way that recon-all can use this change while running the brain. Thanks - Anil On 2/14/07, Nick Schmansky <[EMAIL PROTECTED]> wrote:
Anil, The image has almost no contrast. I've attached a TIFF of one slice. How was this acquired? Bruce, any idea why it would be so white? Nick On Wed, 2007-02-14 at 16:10 -0500, [EMAIL PROTECTED] wrote: > The following files have been uploaded to the Martinos Center FileDrop site > by Anil Roy for you to download: > > (1) orig.mgz > > > > These files will expire in 30 days. > > To view or download these files, go in your web browser to: > > https://www.nmr.mgh.harvard.edu/facility/filedrop/showgroup/5010/426/7389dc72a7ad03d19b7736c8a7adff69 > > DO NOT SHARE this web address with anyone else. It is your personal access key to the files. > > Overall Comment about files from Anil Roy: > > Hi, > > Attached is the orig.mgz file for the subject that quits at the watershed step. > > Thanks, > > Anil. > >
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