running freesurfer-v3.0 SUBJECTS_DIR=/home/gkirk/freesurfer-v3.0/freesurfer/subjects/sickle_cell
glm is at /home/gkirk/freesurfer-v3.0/freesurfer/subjects/sickle_cell and contains age.mat lh.sickle.glmdir mris_preproc.surface.lh.log rh.sickle.thickness.10.mgh FSGDstudy.txt lh.sickle.thickness.10.mgh mris_preproc.surface.rh.log rh.sickle.thickness.mgh FSGDstudy.txt~ lh.sickle.thickness.mgh rh.sickle.glmdir surfer.log lh.sickle.glmdir contains age ar1.mgh beta.mgh eres.mgh fsgd.X.mat mri_glmfit.log rstd.mgh rvar.mgh Xg.dat y.fsgd age/ contains C.dat F.mgh gamma.mgh maxvox.dat sig.mgh SUBJECTS_DIR has average directory with the group av surf & vol stuff I run mri_surfcluster --src lh.sickle.glmdir/age/sig.mgh --sum lh.sickle.glmdir/age/sig.cluster.sum --ocp lh.sickle.glmdir/age/ sig.cluster.mgh ( on same line of course ) and get ERROR: hemi must be supplied I add --hemi lh and get ERROR: srcsubjid must be supplied etc. can't seem to make it happy. thanks Greg.
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