Hi,
I have a question about using tkmedit. Up until now, our group has been
editing out the eye muscles after autorecon-1 and editing out the optic
nerve after autorecon-2. I know on earlier versions of freesurfer it was
highly recommended to do so because the program would sometimes crash
otherwise. However, using the newer version, the program seems to know to
not include eye muscles in the pial matter boundary, and the optic nerve
does create a region of high curvature at that point, but it doesn't crash
the program.
I was wondering, in your own analyses, did you do editing at each step
(excluding situations that are obviously out of the norm), and would it be
a bad thing not to edit those regions in the majority of cases?
Thanks,
Martin Chang
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