are the mri/orig/XXX.mgz files ok? What about the mri/rawavg.mgz?
Catherine Hartley wrote:
Hi,
I just ran autorecon1 on a batch of data and when I view the brainmask in
tkmedit, selecting the coronal orientation actually displays the sagittal
orienation and vice versa (horizontal is fine). Also, when I check the
talairach using tkregister, the talairach comparison volume comes up with a
strange diagonal orientation. Some illustrative images are attached.
Any suggestions for how to correct this would be welcome.
Thank you,
Cate
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