Hi -
Does anyone know if there is a problem with mri_convert used within
the context of unpacksdcmdir? When I type the following at the
command line (which we've used several times successfully in the past
in the Buckner lab):
ssh nexlin6
source /space/freesurfer/nmr-std-env
cd /space/nexus/20/users/jandrews/FDN/070814_4TT00316/scripts
unpacksdcmdir -src `/usr/pubsw/bin/findsession 070814_4TT00316 | grep
PATH | awk '{print $3}'` -targ ../ -cfg
070814_4TT00316_unpack_fsl.cfg -unpackerr
I get the following error:
mri_convert /space/archive/133/siemens/
TrioTim-35006-20070814-165946-670000/670000-3-1.dcm ..//anat/
003/070814_4TT00316_mpr003.nii --sdcmlist ..//anat/003/flf -ot nii --
nspmzeropad 3 --in_type siemens_dicom
ERROR: mri_convert
child killed: segmentation violation
Here's some useful information using bugr:
---------------------------------------------------------------------
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.0.0-20070914
RedHat release: CentOS release 4.4 (Final)
Kernel info: Linux 2.6.9-42.0.3.ELsmp x86_64
NMR Center info (/space/freesurfer exists):
machine: nexlin6
SUBJECTS_DIR: /space/sake/3/users/inverse/subjects
PWD: /space/nexus/20/users/jandrews/FDN/070814_4TT00316/scripts
Thanks very much,
Jessica
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
