Ryan, It appears that tcsh is not being used. Enter tcsh by typing:
tcsh then initialize freesurfer by typing: source $FREESURFER_HOME/SetUpFreeSurfer.csh then try the qdec utility again (and if still gives the same problems, then run the ldd command and send me the results). You can also just type: source $FREESURFER_HOME/SetUpFreeSurfer.sh if your using bash. Nick On Fri, 2008-02-08 at 14:33 -0500, William R Mcgarry wrote: > [EMAIL PROTECTED] qdec]$ source FREESURFER_HOME/bin/tcl_setup > bash: /usr/local/freesurfer/bin/tcl_setup: line 48: syntax error near > unexpected token `setenv' > bash: /usr/local/freesurfer/bin/tcl_setup: line 48: ` if ( -e > $TCLLIBPATH/tcl8.3 ) setenv TCL_LIBRARY $TCLLIBPATH/tcl8.3' > [EMAIL PROTECTED] qdec]$ source $FREESURFER_HOME/bin/vtk_setup > bash: /usr/local/freesurfer/bin/vtk_setup: line 80: syntax error: unexpected > end of file > [EMAIL PROTECTED] qdec]$ source $FREESURFER_HOME/bin/kww_setup > bash: /usr/local/freesurfer/bin/kww_setup: line 62: syntax error: unexpected > end of file > [EMAIL PROTECTED] qdec]$ ldd $FREESURFER_HOME/bin/qdec.bin > linux-gate.so.1 => (0xffffe000) > libtix8.1.8.4.so => not found > libtk8.4.so => /usr/lib/libtk8.4.so (0xf7ef2000) > libtcl8.4.so => /usr/lib/libtcl8.4.so (0xf7e31000) > libGLU.so.1 => /usr/lib/libGLU.so.1 (0xf7dc2000) > libGL.so.1 => /usr/lib/libGL.so.1 (0xf7d1e000) > libX11.so.6 => /usr/lib/libX11.so.6 (0x0050f000) > libXmu.so.6 => /usr/lib/libXmu.so.6 (0xf7d06000) > libverdict.so.1.2 => not found > libvtkGraphics.so.5.1 => not found > libvtkfreetype.so.5.1 => not found > libvtkmetaio.so.5.1 => not found > libvtkpng.so.5.1 => not found > libvtkzlib.so.5.1 => not found > libvtkImaging.so.5.1 => not found > libvtkFiltering.so.5.1 => not found > libvtkCommon.so.5.1 => not found > libvtksys.so.5.1 => not found > libvtkexoIIc.so.5.1 => not found > libvtkNetCDF.so.5.1 => not found > libvtkVolumeRendering.so.5.1 => not found > libvtkRendering.so.5.1 => not found > libvtkftgl.so.5.1 => not found > libvtkWidgets.so.5.1 => not found > libvtkHybrid.so.5.1 => not found > libvtkIO.so.5.1 => not found > libvtkDICOMParser.so.5.1 => not found > libvtkVolumeRenderingTCL.so.5.1 => not found > libvtkRenderingTCL.so.5.1 => not found > libvtkFilteringTCL.so.5.1 => not found > libvtkWidgetsTCL.so.5.1 => not found > libvtkHybridTCL.so.5.1 => not found > libvtkGraphicsTCL.so.5.1 => not found > libvtkImagingTCL.so.5.1 => not found > libvtkIOTCL.so.5.1 => not found > libvtkCommonTCL.so.5.1 => not found > libKWWidgets.so => not found > libz.so.1 => /lib/libz.so.1 (0x001fd000) > libcrypt.so.1 => /lib/libcrypt.so.1 (0x00bcd000) > libdl.so.2 => /lib/libdl.so.2 (0x00bb7000) > libpthread.so.0 => /lib/libpthread.so.0 (0xf7ce7000) > libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xf7c2e000) > libm.so.6 => /lib/libm.so.6 (0xf7c04000) > libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00df2000) > libc.so.6 => /lib/libc.so.6 (0x00a5c000) > libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x008e9000) > libGLcore.so.1 => /usr/lib/libGLcore.so.1 (0xf70ee000) > libnvidia-tls.so.1 => /usr/lib/tls/libnvidia-tls.so.1 (0xf70eb000) > libXext.so.6 => /usr/lib/libXext.so.6 (0x0089a000) > libxcb-xlib.so.0 => /usr/lib/libxcb-xlib.so.0 (0x0050b000) > libxcb.so.1 => /usr/lib/libxcb.so.1 (0x0060d000) > libXt.so.6 => /usr/lib/libXt.so.6 (0x00632000) > /lib/ld-linux.so.2 (0x00a3d000) > libXau.so.6 => /usr/lib/libXau.so.6 (0x00d4c000) > libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00d6f000) > libSM.so.6 => /usr/lib/libSM.so.6 (0xf70e1000) > libICE.so.6 => /usr/lib/libICE.so.6 (0xf70c7000) > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
