Hi all,
I'm trying to run qdec on a SL 4.5:
[EMAIL PROTECTED] ~]$ uname -a
Linux neuro01.pic.es 2.6.9-55.0.12.ELsmp #1 SMP Thu Nov 1 08:41:34 CST 2007
i686 i686 i386 GNU/Linux
[EMAIL PROTECTED] ~]$ /lib/libc.so.6
GNU C Library stable release version 2.3.4, by Roland McGrath et al.
Copyright (C) 2005 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
Compiled by GNU CC version 3.4.5 20051201 (Red Hat 3.4.5-2).
Compiled on a Linux 2.4.20 system on 2007-06-05.
Available extensions:
GNU libio by Per Bothner
crypt add-on version 2.1 by Michael Glad and others
linuxthreads-0.10 by Xavier Leroy
The C stubs add-on version 2.1.2.
BIND-8.2.3-T5B
NIS(YP)/NIS+ NSS modules 0.19 by Thorsten Kukuk
Glibc-2.0 compatibility add-on by Cristian Gafton
GNU Libidn by Simon Josefsson
libthread_db work sponsored by Alpha Processor Inc
Thread-local storage support included.
For bug reporting instructions, please see:
<http://www.gnu.org/software/libc/bugs.html>.
I get these errors after run the design analyze:
first:
ERROR: In
/usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line
221
vtkKWQdecApp (0x8790db8):
Script:
FsgdfPlot_IsWindowShowing 0
Returned Error on line 1:
invalid command name "FsgdfPlot_IsWindowShowing"
Stack trace:
invalid command name "FsgdfPlot_IsWindowShowing"
while executing
"FsgdfPlot_IsWindowShowing 0"
which I can ignore, and then:
ERROR: In
/usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx, line
1182
vtkKWQdecApp (0x87903e0): TclTk error: invalid command name "vtkTemp351"
invalid command name "vtkTemp351"
while executing
"vtkTemp351 FocusInCallback"
(command bound to event)
ERROR: In
/usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx, line
1182
vtkKWQdecApp (0x87903e0): TclTk error: invalid command name "vtkTemp349"
invalid command name "vtkTemp349"
while executing
"vtkTemp349 FinishEditing"
(command bound to event)
Looking for the error in archive list, I've seen people experimenting so.
Following what you have recommended in
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg06821.html, I
get a clear ldd:
[EMAIL PROTECTED] ~]$ tcsh
[EMAIL PROTECTED] ~]$ source $FREESURFER_HOME/SetUpFreeSurfer.csh
[EMAIL PROTECTED] ~]$ source /usr/local/freesurfer/SetUpFreeSurfer.csh
-------- freesurfer-Linux-rh9-stable-pub-v4.0.2 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME /usr/local/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /usr/local/freesurfer/subjects
MNI_DIR /usr/local/freesurfer/mni
[EMAIL PROTECTED] ~]$ source $FREESURFER_HOME/bin/tcl_setup
FS_TCL_HOME =/usr/local/freesurfer/lib/tcltktixblt
TCLLIBPATH= /usr/local/freesurfer/lib/tcltktixblt/lib
[EMAIL PROTECTED] ~]$ source $FREESURFER_HOME/bin/vtk_setup
[EMAIL PROTECTED] ~]$ source $FREESURFER_HOME/bin/kww_setup
$ ldd $FREESURFER_HOME/bin/qdec.bin
libtix8.1.8.4.so =>
/usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.so (0x0053c000)
libtk8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtk8.4.so
(0x00aa3000)
libtcl8.4.so =>
/usr/local/freesurfer/lib/tcltktixblt/lib/libtcl8.4.so (0x007c6000)
libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x00173000)
libGL.so.1 => /usr/X11R6/lib/libGL.so.1 (0x00d8a000)
libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x00b8e000)
libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x0063e000)
libverdict.so.1.2 =>
/usr/local/freesurfer/lib/vtk/lib/libverdict.so.1.2 (0x005d8000)
libvtkGraphics.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkGraphics.so.5.1 (0x00df8000)
libvtkfreetype.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkfreetype.so.5.1 (0x001f1000)
libvtkmetaio.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkmetaio.so.5.1 (0x00253000)
libvtkpng.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkpng.so.5.1 (0x004c6000)
libvtkzlib.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkzlib.so.5.1 (0x00112000)
libvtkImaging.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkImaging.so.5.1 (0x06a09000)
libvtkFiltering.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkFiltering.so.5.1 (0x05b29000)
libvtkCommon.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkCommon.so.5.1 (0x002d9000)
libvtksys.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtksys.so.5.1 (0x00123000)
libvtkexoIIc.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkexoIIc.so.5.1 (0x004e6000)
libvtkNetCDF.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkNetCDF.so.5.1 (0x00d15000)
libvtkVolumeRendering.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRendering.so.5.1 (0x02dd9000)
libvtkRendering.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkRendering.so.5.1 (0x01edd000)
libvtkftgl.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkftgl.so.5.1 (0x004a2000)
libvtkWidgets.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkWidgets.so.5.1 (0x00653000)
libvtkHybrid.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkHybrid.so.5.1 (0x01415000)
libvtkIO.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkIO.so.5.1
(0x016bf000)
libvtkDICOMParser.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkDICOMParser.so.5.1 (0x008c9000)
libvtkVolumeRenderingTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRenderingTCL.so.5.1
(0x0057f000)
libvtkRenderingTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkRenderingTCL.so.5.1 (0x008e8000)
libvtkFilteringTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkFilteringTCL.so.5.1 (0x01b2f000)
libvtkWidgetsTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkWidgetsTCL.so.5.1 (0x00c91000)
libvtkHybridTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkHybridTCL.so.5.1 (0x0085f000)
libvtkGraphicsTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkGraphicsTCL.so.5.1 (0x01c20000)
libvtkImagingTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkImagingTCL.so.5.1 (0x009a4000)
libvtkIOTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkIOTCL.so.5.1 (0x074fb000)
libvtkCommonTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkCommonTCL.so.5.1 (0x075fb000)
libKWWidgets.so =>
/usr/local/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.so
(0x021be000)
libz.so.1 => /usr/lib/libz.so.1 (0x00c7f000)
libcrypt.so.1 => /lib/libcrypt.so.1 (0x06365000)
libdl.so.2 => /lib/libdl.so.2 (0x00b88000)
libpthread.so.0 => /lib/tls/libpthread.so.0 (0x00d76000)
libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x041e2000)
libm.so.6 => /lib/tls/libm.so.6 (0x00b63000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x004ad000)
libc.so.6 => /lib/tls/libc.so.6 (0x04bf2000)
libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x00c6f000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x0433b000)
libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0x001ea000)
libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x00a33000)
libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x00d6b000)
libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x00d51000)
libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x005ae000)
libtiff.so.3 => /usr/lib/libtiff.so.3 (0x06480000)
libexpat.so.0 => /usr/lib/libexpat.so.0 (0x00607000)
/lib/ld-linux.so.2 (0x00a1b000)
But I still get the error after running the design analyze.
So, could you please recomend us what other posibilities do we have in order
to correct the error?¿
TIA,
Gonzalo
--
Gonzalo Sánchez Benavides
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