Dear FS-Experts,
I am trying to run Freesurfer on a Ubuntu 7.10 (Gutsy Gibbon) system and
unfortunately I encounter the same problem that Gonzalo Sanchez
Benavides and also William McGarry described in earlier emails. Copying
the new fsgdfPlot.tcl into the $FREESURFER_HOME/lib/tcl directory
stopped the "FsgdfPlot_IsWindowShowing" error but did not save me from
getting the other two error messages:
/ERROR: In
/usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx,
line 1182
vtkKWQdecApp (0x8817de0): TclTk error: invalid command name "vtkTemp349"
invalid command name "vtkTemp349"
while executing
"vtkTemp349 FocusInCallback"
(command bound to event)
ERROR: In
/usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx,
line 1182
vtkKWQdecApp (0x8817de0): TclTk error: invalid command name "vtkTemp347"
invalid command name "vtkTemp347"
while executing
"vtkTemp347 FinishEditing"
(command bound to event)
/
Following the advice given in earlier emails I get:
/-------- freesurfer-Linux-rh9-stable-pub-v4.0.2 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME /usr/local/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /home/christian/Promotion/Tutorial/group_analysis_tutorial
MNI_DIR /usr/local/freesurfer/mni
christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> source
$FREESURFER_HOME/bin/tcl_setup
christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> source
$FREESURFER_HOME/bin/vtk_setup
christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> source
$FREESURFER_HOME/bin/kww_setup
christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> ldd
$FREESURFER_HOME/bin/qdec.bin
linux-gate.so.1 => (0xffffe000)
libtix8.1.8.4.so =>
/usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.so (0xb7f0a000)
libtk8.4.so =>
/usr/local/freesurfer/lib/tcltktixblt/lib/libtk8.4.so (0xb7e4a000)
libtcl8.4.so =>
/usr/local/freesurfer/lib/tcltktixblt/lib/libtcl8.4.so (0xb7db0000)
libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb7d1f000)
libGL.so.1 => /usr/lib/libGL.so.1 (0xb7c89000)
libX11.so.6 => /usr/lib/libX11.so.6 (0xb7b98000)
libXmu.so.6 => /usr/lib/libXmu.so.6 (0xb7b82000)
libverdict.so.1.2 =>
/usr/local/freesurfer/lib/vtk/lib/libverdict.so.1.2 (0xb7b53000)
libvtkGraphics.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkGraphics.so.5.1 (0xb7535000)
libvtkfreetype.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkfreetype.so.5.1 (0xb74d3000)
libvtkmetaio.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkmetaio.so.5.1 (0xb744d000)
libvtkpng.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkpng.so.5.1 (0xb742d000)
libvtkzlib.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkzlib.so.5.1 (0xb741d000)
libvtkImaging.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkImaging.so.5.1 (0xb70ed000)
libvtkFiltering.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkFiltering.so.5.1 (0xb6e2e000)
libvtkCommon.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkCommon.so.5.1 (0xb6c65000)
libvtksys.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtksys.so.5.1 (0xb6c2c000)
libvtkexoIIc.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkexoIIc.so.5.1 (0xb6bea000)
libvtkNetCDF.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkNetCDF.so.5.1 (0xb6bb6000)
libvtkVolumeRendering.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRendering.so.5.1 (0xb66b1000)
libvtkRendering.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkRendering.so.5.1 (0xb63d0000)
libvtkftgl.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkftgl.so.5.1 (0xb63c5000)
libvtkWidgets.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkWidgets.so.5.1 (0xb6255000)
libvtkHybrid.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkHybrid.so.5.1 (0xb5faa000)
libvtkIO.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkIO.so.5.1 (0xb5b3a000)
libvtkDICOMParser.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkDICOMParser.so.5.1 (0xb5b1b000)
libvtkVolumeRenderingTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRenderingTCL.so.5.1
(0xb5aec000)
libvtkRenderingTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkRenderingTCL.so.5.1 (0xb5a30000)
libvtkFilteringTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkFilteringTCL.so.5.1 (0xb593e000)
libvtkWidgetsTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkWidgetsTCL.so.5.1 (0xb58ca000)
libvtkHybridTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkHybridTCL.so.5.1 (0xb5869000)
libvtkGraphicsTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkGraphicsTCL.so.5.1 (0xb5756000)
libvtkImagingTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkImagingTCL.so.5.1 (0xb56e7000)
libvtkIOTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkIOTCL.so.5.1 (0xb5661000)
libvtkCommonTCL.so.5.1 =>
/usr/local/freesurfer/lib/vtk/lib/libvtkCommonTCL.so.5.1 (0xb55d4000)
libKWWidgets.so =>
/usr/local/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.so
(0xb5097000)
libz.so.1 => /usr/lib/libz.so.1 (0xb5082000)
libcrypt.so.1 => /lib/tls/i686/cmov/libcrypt.so.1 (0xb5054000)
libdl.so.2 => /lib/tls/i686/cmov/libdl.so.2 (0xb504f000)
libpthread.so.0 => /lib/tls/i686/cmov/libpthread.so.0 (0xb5037000)
libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xb4f7d000)
libm.so.6 => /lib/tls/i686/cmov/libm.so.6 (0xb4f58000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb4f4d000)
libc.so.6 => /lib/tls/i686/cmov/libc.so.6 (0xb4e03000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb4d0f000)
libGLcore.so.1 => /usr/lib/libGLcore.so.1 (0xb4377000)
libnvidia-tls.so.1 => /usr/lib/tls/libnvidia-tls.so.1 (0xb4375000)
libXext.so.6 => /usr/lib/libXext.so.6 (0xb4367000)
libXau.so.6 => /usr/lib/libXau.so.6 (0xb4364000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb435e000)
libXt.so.6 => /usr/lib/libXt.so.6 (0xb430d000)
libSM.so.6 => /usr/lib/libSM.so.6 (0xb4305000)
libICE.so.6 => /usr/lib/libICE.so.6 (0xb42ed000)
libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb42cd000)
libtiff.so.3 => /usr/lib/libtiff.so.3 (0xb4278000)
libexpat.so.0 => /usr/lib/libexpat.so.0 (0xb4258000)
/lib/ld-linux.so.2 (0xb7f46000)
christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial>
/But still the error messages do not want to disappear...
Any idea where my mistake might be?
I am not sure if this is of any relevance but I have added "setenv
XLIB_SKIP_ARGB_VISUALS 1" to my SetUpFreeSurfer.csh as without it I was
not able to open Qdec at all.
Best wishes and thanks a lot in advance,
Christian
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