Hi everyone,
We're making a template to register some monkey brain surfaces to.
I've written a script based on instructions from the Surface
Registration and Templates page ( http://surfer.nmr.mgh.harvard.edu/fswiki/SurfaceRegAndTemplates
) on FreeSurfer wiki.
I'm stuck at "Round 1" with the "mris_make_template" command. In the
first step we used:
mris_make_template \
lh sphere \
bu_edited bs_edited vi_edited \
lh.monk_temp_all.tif
As there were no *h.sphere.reg files yes, we used the *h.phere
surfaces. My question is, for the next "mris_make_template" should we
use the same (*h.sphere) surface or use the newly created
*h.sphere.reg surfaces to create the template?
mris_make_template \
lh sphere.reg \
bu_edited bs_edited vi_edited \
lh.monk_temp_all.tif
Has anyone else used this process to create their own templates/
registered surfaces? Does anyone have any suggestions? Thanks.
- Jan Kalkus
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