Hi Michael and other FS experts I have longitudinal data of three patients with atrophy in the caudate nuclues. When I produce a figure from time point 1 and one figure from time point 2 in order to visualize the atrophy, the figures look different due the different orientations of the two images in native space. How can I reorient the two T1.mgz images and the aseg and the surfaces in a way that the AC-PC plane is horizontal in the native space in order to produce figures that show both images at the same plane.
Thanks a lot for help Best regards Juergen On 7.10.2008 17:22 Uhr, "Michael Harms" <[EMAIL PROTECTED]> wrote: > > Yes, tkmedit shows the image volume in native space. What you are > seeing regarding the corresponding talairach coordinates is consistent > with that. > > cheers, > Mike H. > > On Tue, 2008-10-07 at 16:54 +0200, Juergen Haenggi wrote: >> Dear FS experts >> >> I posted another email about my confusion with the coordinates in tkmedit. >> When I move horizontally over the coronally presented image, the >> y-coordinate only change in the range of 1-2 mm. When I move vertically the >> y-coordinate change from 28 at the top to 8 at the bottom. >> >> Does it mean that the image is oblique oriented in the native space? >> >> Thanks >> Regards >> Juergen >> >> ----------------------------------------------------------- >> Juergen Haenggi >> Ph.D. (Dr. des.) >> Division of Neuropsychology >> Institute of Psychology >> University of Zurich >> Binzmuehlestrasse 14, PO Box 25 >> 8050 Zurich, Switzerland >> 0041 44 635 73 97 (phone office) >> 0041 76 445 86 84 (phone mobile) >> 0041 44 635 74 09 (fax office) >> BIN 4.D.04 (office room number) >> [EMAIL PROTECTED] (email) >> http://www.psychologie.uzh.ch/neuropsy/ (website) >> http://www.juergenhaenggi.ch (private website) >> ----------------------------------------------------------- >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ----------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) [EMAIL PROTECTED] (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) ----------------------------------------------------------- _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
