Julia, Most likely the processed data for that subject is out of sync (stuff rerun later and out of order). If you run:
recon-all -s subjid -make all then it should do nothing if all the data files were created in the right order. I would add -dontrun to that recon-all command so it just prints what it will run in case stuff is out of sync. The -qcache option will print a warning to the recon-all.log if it cant find a measure. It prints a warning instead of stopping because some measures (jacobian_white for instance) dont exist on older freesurfer data. So, in short, run recon-all -s subj -make all on your subjects. Nick On Fri, 2008-12-05 at 21:38 +0000, Julia Altenburg wrote: > Hi, > when running qdec the following error shows up. It is possible to run the > analysis for the lh. thickness and area but not for the same in rh. > In the single subject folders the averages for rh. are missing. qcache did > run without any error messages. > > I thought it could have something to do with the fsaverage or qcache, but > changes within those didn't change the message. > > With -emacx I found out that there were problems within the lh. process > allready. It seems to be the same error then the following > I found something simmilar in the mailing list: > > > ERROR: number of vertices in > /usr/local/freesurfer/subjects/4964-14_recon/surf/lh.thickness does not match > surface (138139,137319)ERROR: reading curvature file > > why is it that rh. isn't readable then? > Is there anything then running the whole recon-all process again I could do? > > Thanks a lot in advance > I'm thankful for any advice > > Julia > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
