Nick, Here is that data:
recon-all --version $Id: recon-all,v 1.133.2.30 2008/04/17 20:38:23 nicks Exp $ cd /opt/freesurfer harris% cat build-stamp.txt freesurfer-Darwin-leopard-i686-stable-pub-v4.0.5 harris% ls -l /opt/freesurfer lrwxr-xr-x 1 root admin 35 Nov 28 09:31 /opt/freesurfer@ -> /opt/freesurfer_v4.1.0-full_Darwin9 >From this I can see that our internal propagation of directories /opt/freesurfer_v4.1.0-full_Darwin9 was somehow based on the wrong .dmg file. We will try again at our end. Thanks. Greg On 12/12/08 2:02 PM, "Nick Schmansky" <[email protected]> wrote: > Greg, > > Does the build-stamp.txt file in your $FREESURFER_HOME say: > > freesurfer-Darwin-leopard-i686-stable-pub-v4.1.0 ? > > I'm puzzled as to why mri_segstats is missing from your distribution and > recon-all does not recognize -segstats, as I have just now confirmed > that the publicly released distribution: > freesurfer-Darwin-leopard-i686-stable-pub-v4.1.0-full.dmg > both contains mri_segstats, and recognizes the segstats flag. Also I > have double-checked this with others who have installed this version. > > Can you email me the recon-all you are using? Or just send me the > output of 'recon-all --version'. > > I corrected the ReleaseNotes to say -wmparc instead of -wmstats, thanks. > > Nick > > > > On Fri, 2008-12-12 at 18:38 -0600, Greg Harris wrote: >> Nick, >> >> We have yet another request regarding the MacOSX Leopard Intel version 4.1.0 >> download package that delivers FreeSurfer. >> >> The program mri_segstats is not found, although it is there in the Linux >> package. Also, recon-all -segstats gives the 'switch not recognized' error >> message in MacOSX Leopard Intel, but accepts it in the recon-all in the >> Linux package. >> >> I also noted that the fswiki/ReleaseNotes tells us to run recon-all >> -segstats -wmstats, but there is no -wmstats; what you need is -wmparc. >> >> Until you can post the updated files, probably mri_segstats and recon-all, >> we will have to avoid FreeSurfing on our Macs which number about half of our >> compute cluster. >> >> Thanks for your help! >> >> Greg Harris >> Iowa Psychiatric NeuroImaging Consortium >> >> >> >> Notice: This UI Health Care e-mail (including attachments) is covered by the >> Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential >> and may be legally privileged. If you are not the intended recipient, you >> are hereby notified that any retention, dissemination, distribution, or >> copying of this communication is strictly prohibited. Please reply to the >> sender that you have received the message in error, then delete it. Thank >> you. >> >> > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
