1)
tkmedit $subject norm.mgz -segmentation aseg.mgz
2)
there are editing tools in tkmedit you can use.
3)
you'll need to regenerate the aseg.stats file and the aparc+aseg stuff, but
if the edits aren't near cortex you don't necessarily have to. Unless you
are really trying to save computer time you might as well though
On Thu, 8 Jan 2009, Kelly
Silva wrote:
1) I need the command line to visualize the segmentation of subcortical
structures, because I want to see if the segmentation of thalamus is good.
2) If the segmentation is not good, how can I make changes manually?
3) After the changes, is it necessary to run Recon2 and Recon3
again??? Thanks, Kelly
________________________________
De: Bruce Fischl <[email protected]>
Para: Kelly Silva <[email protected]>
Cc: [email protected]
Enviadas: Quinta-feira, 8 de Janeiro de 2009 15:31:11
Assunto: Re: Res: [Freesurfer] Subcortical Label
sorry, you mean in our .label format? I'm still not sure I understand.
On Thu, 8 Jan 2009, Kelly Silva wrote:
Hi,
I need that the ROI appears like a label, for example, together with the
parcelations of aparc.a2005s.stats/aparc.stats, becaus I have a program that
reads the labels from aparc.stats.
Thanks, Kelly
________________________________
De: Bruce Fischl <[email protected]>
Para: Kelly Silva <[email protected]>
Cc: [email protected]
Enviadas: Quinta-feira, 8 de Janeiro de 2009 15:17:52
Assunto: Re: [Freesurfer] Subcortical Label
sure, what format would you like the ROI in?
On Thu, 8 Jan 2009, Kelly Silva
wrote:
Hello,
I´d like to know if there is some way to create a ROI-label of a subcortical
structure. If there is a way, please tell me how to do.
Thanks, Kelly
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