Hi Jose,
mri_extract_label should do the trick if you give the output volume the
.nii extension. THey will be in native space. Use aparc+aseg.mgz as input
if you want cortical regions in the volume (although of course you lose
resolution)
cheers,
Bruce
On Thu, 28 May 2009, Jose Luis
Cantero Lorente wrote:
Dear Freesurfers,
Is it possible to export to nii format specific regions previously
segmented with FS? If yes, how should I proceed with this task in the case
of cortical and subcortical regions? Are they exported in the MNI space,
Talairach,...?
Thanks in advance.
Best regards,
Jose
---
Jose Luis Cantero, Ph.D.
Laboratory of Functional Neuroscience
Department of Physiology, Anatomy, and Cellular Biology
University Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Sevilla
- Spain -
Phone: +34 954 977433
Fax: +34 954 349151
Email: [email protected]
http://www.upo.es/neuroaging/es/
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