Perhaps I should have asked: Do I need to separately install FSL? Thanks > Hi, > > I ran the following preproc-sess command and mkbrainmask-sess failed, with > an error message of not finding fsmaths. I don't know where to be looking > for this file and what previous command should have generated it. Can > anyone help me out? > > Thanks! > Dahlia. > > I ran: > preproc-sess -sf sessid_subj31.txt -df sesspar -fwhm 5 > > The error message was: > ERROR: cannot find either fslmaths for avwmaths > ERROR: mkbrainmask failed > ERROR: mkbrainmask-sess failed > > > mkbrainmask-sess.log says: > mkbrainmask-sess > $Id: mkbrainmask-sess,v 1.12.2.1 2008/10/02 21:56:15 greve Exp $ > Linux mbc.stanford.edu 2.6.22.9-61.fc6 #1 SMP Thu Sep 27 18:07:59 EDT 2007 > x86_64 x86_64 x86_64 GNU/Linux > Tue Jun 30 11:01:46 PDT 2009 > /home/dahlia.sharon/functionals/fba_study_mtloc > -maskstem brain -fsd bold -s mtloc_19may07 -d > /home/dahlia.sharon/functionals/subj31 -update > > This is the command preproc-sess invoked: > mkbrainmask -i 025/f.bhdr -o masks/brain.nii -thresh 0.1 -ndil 1 -nerode 0 > > The data is not on the network so I can't give paths. > > >
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