For WM, you can use aparc+aseg.mgz and use indices 2 and 41. Do you want a particular GM or all GM?
Ed Gronenschild wrote: > Doug, > > The file "segmentation.mgz" doesn't exist. > I think that you mean that segmentation.mgz stands > for either WM or GM. Can you provide me the > exact file names of the final WM and GM segmentations. > > Ed > > > On 25 Aug 2009, at 17:28, Douglas N Greve wrote: > > >> mri_convert segmentation.mgz segmentation.nii >> >> should do it >> >> doug >> >> Ed Gronenschild wrote: >> >>> Hi, >>> >>> I would like to extract the WM and GM segmentations >>> used for the final cortical thickness calculations as >>> nifti files. How can I do that? >>> >>> Ed >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> In order to help us help you, please follow the steps in: >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
