Check the skull stripping. This can cause the FS-specific talairach alignment to fail.
Paltoglou, Aspasia E wrote: > Dear All, > > I am new to freesurfer and I was wondering if you could give me some advice. > > I run the freesurfer analysis on the anatomical scan of one subject and I > noticed that in output files from wm.asegedit.mgz onwards, large part of the > brain (frontal lobes) appears to be missing. I checked the previous output > file (wm.seg.mgz) and seems to be fine, so there must be a problem when > creating wm.asegedit.mgz. > > Many thanks, > > Aspa > > > The University of Aberdeen is a charity registered in Scotland, No SC013683. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
