Please disregard my last email, my computer restarted and after this, VMware 
loaded up normally. 

-----Original Message-----
From: Ahmed, F, Me <fah...@sun.ac.za> 
Sent: 01 October 2009 09:24
To: 'Nick Schmansky'; Abe, Sumiko
Cc: Freesurfer Mailing List
Subject: RE: [Freesurfer] tksurfer

Hello,

I seem to have a slight problem. I tried to update the Nvidia graphics driver, 
as I do have this, however, when I typed in: 

su root
/sbin/init 3

It closed my terminal, closed the desktop and seemed to be restarting VMware, 
it went to the start up page for VMware, and asked me for username and 
password, so I typed that in, expecting it to take me into my actual VMware 
desktop, which it didn't and it instead asked me to type commands in this start 
up page...now I can't get into the actual desktop...how can I get back in? 

Thank you 


-----Original Message-----
From: Nick Schmansky [mailto:ni...@nmr.mgh.harvard.edu] 
Sent: 30 September 2009 17:46
To: Abe, Sumiko
Cc: Ahmed, F, Me <fah...@sun.ac.za>; Freesurfer Mailing List
Subject: Re: [Freesurfer] tksurfer

Abe,

This tksurfer display problem has been a difficult one to debug, due to
the complexity of opengl and graphics drivers, and the lack of error
codes (at least that I can find).

Sebastian mentions some possible workarounds in his email.  The first
one to try, assuming you have an Nvidia graphics card, is to update the
driver.  To do this:

su root
/sbin/init 3
/usr/bin/nividia-installer --update

(follow the instructions)

often times this update fixes the tksurfer 'sliver' problem.  outside of
that, you can try overriding the mesa drivers.  you'll need to talk to
your sysadmin to do that.

Nick


On Wed, 2009-09-30 at 05:50 -0700, Abe, Sumiko wrote:
> We have same problem. Any advise would be great appreciated. 
> 
>  
> 
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Sumiko Abe, Ph.D
> Dept. of Psychiatry & Human Behavior
> University of California, Irvine
> 5251 California Dr, #204
> Irvine, CA 92697
> 
> Tel: 1-949-824-2972
> E-mail: sumi...@uci.edu
> 
> 
>  
> 
>                                    
> ______________________________________________________________________
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf OfAhmed, F,
> Me <fah...@sun.ac.za>
> Sent: Wednesday, September 30, 2009 1:31 AM
> To: Freesurfer Mailing List
> Subject: [Freesurfer] tksurfer
> 
> 
>  
> 
> Hello,
> 
> 
>  
> 
> 
> I’m trying to view and check the smoothing and inflation surfaces, the
> white and pial surfaces for “bert” using tksurfer as I’m trying to get
> used to using Freesurfer, but I’m a little confused to what I’m
> seeing. When I type in: “tksurfer bert lh inflated” for example, I
> only see a very small section at the very end of the image…is this
> correct? When I view the curv files, I do see a green pattern overlaid
> on the inflated surface, however it’s still so small. When I view the
> pial and white surfaces, again, the section displayed is very small, I
> don’t know if this is correct or if this is what I am supposed to be
> seeing? Also, when I type in: “tksurfer bert lh sphere”, I see nothing
> at all.
> 
> 
>  
> 
> 
> If someone could shed some light on the matter I’d be extremely
> grateful. 
> 
> 
>  
> 
> 
> Thank you
> 
> 
>  
> 
> 
>  
> 
> 
>  
> 
> 
>  
> 
> 
> 
> 
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