Hi, Thank you for your suggestion. But, I run the MATLAB under windows XP, because I can’t setup the MATLAB under LINUX. I don’t know what’s wrong, and now I only run MATLAB under windows XP.
So, when I did anova command to obtain F value and p value using MATLAB under windows XP. I save these values in xls format. Then, I would like to map F value and p value to inflated surface of fsaverage, respectively. Could you tell me how to do and what command do I type? And, what’s the functional volume? Thank you in advance! Feng-Xian Yan 2009/10/1 Douglas N Greve <gr...@nmr.mgh.harvard.edu> > The easiest thing to do is to specify your output of mri_surf2surf as mgh > format instead of curv. The read that directly into matlab with our > MRIread() matlab command (ie, no mris_convert stage). Make your computations > in matlab, then write them out as mgh format using MRIwrite(). > > doug > > Feng-Xian Yan wrote: > >> >> Hi, >> >> The mri_surf2surf command line was >> >> mris_surf2surf --srcsubject xxx --sval xxx/surf/lh.thickness --sfmt curv >> --hemi lh --trgsubject fsaverage --tfmt curv --tval >> fsaverage/surf/lh.xxx.thickness >> >> mris_convert –c fsaverage/surf/lh.xxx.thickness fsaverage/surf/lh.white >> fsaverage/surf/lh.xxx.thickness.asc >> >> From these two command lines, I obtained the asc file with the coordinates >> of 163842 vertices and their thickness value. >> >> Then, I did anova analysis to obtain F value and p value using MATLAB. >> >> After I obtained the results from MATLAB, I want to map these results to >> inflated surface of fsaverage. >> >> Could you tell me how to do and what command do I type? Or, you could >> recommend me another way to obtain the same map. >> >> >> Thank you in advance! >> >> >> Feng-Xian >> >> >> >> 2009/10/1 Bruce Fischl <fis...@nmr.mgh.harvard.edu <mailto: >> fis...@nmr.mgh.harvard.edu>> >> >> what was your mri_surf2surf command line? >> >> On Thu, 1 Oct 2009, Feng-Xian Yan wrote: >> >> Hi, >> >> But the number of vertex I obtain using mri_surf2surf is >> 65536 each >> hemisphere. So, how can I do to make the number is closer to >> 130,000? >> >> >> >> Thank you in advance! >> >> >> >> Feng-Xian >> >> >> 2009/10/1 Bruce Fischl <fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.harvard.edu>> >> >> use mri_surf2surf. And you should have more than 65536 >> vertices/hemisphere. >> Usually the # is closer to 130,000 >> >> On Thu, 1 Oct 2009, Feng-Xian Yan wrote: >> >> Hi, >> >> >> I run all my subjects using recon-all ?subjid xxx >> ?autorecon-all. I get >> the cortical thickness value of each vertex (65536 >> each hemisphere). Then >> I >> obtain F value and p value of anova analysis using >> MATLAB. Now, I want to >> map the results of anova to fsaverage. Could these >> values do that? Or, you >> could recommend me another way to obtain the same map. >> >> >> >> Thank you in advance! >> >> >> >> Feng-Xian >> >> >> >> >> 2009/10/1 Bruce Fischl <fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.harvard.edu>> >> >> Hi Feng-Xian >> >> have you run recon-all on your anatomical data? >> What kind of data do you >> want to map? Is it a functional volume? >> >> cheers >> Bruce >> >> On Thu, 1 Oct 2009, Feng-Xian Yan wrote: >> >> Hi, >> >> I have a problem want to solve. >> I want to map the data file (.xls or .txt) to >> fsaverage. What command do >> I >> type? >> >> >> >> Thank you in advance! >> >> >> Feng-Xian >> >> >> >> >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > >
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