That is the command that I would use. Make sure your activation map actually lines up with the MNI152 brain found in FSL.
dopug Yigal Agam wrote: > Hi Doug, > > Returning to this old thread: I'm doing what you said and getting > weird results (activation not where I think it should be): > > mri_vol2vol --mov <MNI152 template> --targ <fsaverage source> --inv > --reg $FREESURFER_HOME/average/mni152.register.dat --o <output MNI > volume> --no-save-reg > > Can you give an example of the command you would use? > > Thanks, > Yigal > > > > Douglas N Greve wrote: >> Use $FREESURFER_HOME/average/mni152.register.dat and mri_vol2vol with >> --inv >> >> Yigal Agam wrote: >>> Hi, >>> >>> What's the best way to convert an fsaverage volume into an MNI152 >>> volume that can be viewed on top of a standard brain >>> (MNI152_T1_2mm_brain.nii.gz) in fslview? >>> >>> Thanks, >>> Yigal >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
