Dear Fs experts
I'm trying to run a recon-all on one subject but FS gives me the following
error message:
#...@# Skull Stripping Mon Dec 21 17:25:55 CET 2009
Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006
x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Dec 21 18:11:04 CET 2009
I take a look in the log trying to fing a solution and say:
****************TEMPLATE DEFORMATION****************
second estimation of the COG coord: x=127,y=128, z=127, r=9985 iterations
GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 20574
RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 99
LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 126
RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 936
LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 576
OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 18837
mri_watershed Error:
GLOBAL region of the brain empty !
Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006
x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Dec 21 18:11:04 CET 2009
what can I do to keep with the recon-all, could be something wrong in the image?
Best
Gabriel
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