The easiest thing to do is just mask the polar with the sig, something like:
mri_mask -T 2 -abs polar.nii sig.nii polar.sig2masked.nii In this case, it will mask the polar using p < .01 (sig=2) doug Natalia Zaretskaya wrote: > Hi all, hi Doug, > > I am analysing polar angle retinotopy with abblocked design, but can > not figure out how to paint the output of sfa-sess correctly, so that > I see something reasonable. I know that my analysis generally worked > fine, because when I can view the phase.nii overlay, and it looks > quite polar. It's just that it is not thresholded. > I would really appreciate a hint! > > Best regards, > Natalia > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
