what version of freesurfer are you running?
On Mon, 2010-01-25 at 10:12 -0600, Guang Zeng wrote: > Hi, there, > > I have some scans which have poor white matter and gray matter > contrast, and the results of the intensity normalization step are > pretty bad. > So I add some controls, the results looks much better now. > > But I met a question now, I sent these results-improved subjects to FS > longitudinal stream without those controls points, the longitudinal > results are > as bad as before. > > My command line is: > recon-all -base subj_based_id -tp subj1 -tp subj2 -all > recon-all -long subj1 subj_base -all > recon-all -long subj2 subj_base -all > > I think the problem is the FS surfer longitudinal stream will copy the > orig.mgz of each time point, map them to the base template, and then > go through FS stream again. > How can I map my added control points to the base template, and use > them in the longitudinal stream, > or I should map it to somewhere at the recon-all -base subj_based_id > -tp subj1 -tp subj2 -all step. > > > Thanks! > > Guang > > > ______________________________________________________________________ > Hotmail: Free, trusted and rich email service. Get it now. > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
