the fsaverage subject is in Talairach space (actually, mni305 space), so using the /transforms/talairach.xfm file in your subjects/mri dir will be the proper transform to use for transform to fsaverage space.
n. On Thu, 2010-02-11 at 17:42 -0500, Mishkin Derakhshan wrote: > Hi, > I am looking for the transformation matrix that takes my input volume > (orig.mgh) and maps it into the same space as fsaverage (or the > inverse of this transformation if it already exists). > I've already run recon-all -all, and -qcache, so I'm pretty sure this > information exists somewhere, but after searching through the data, > the wiki and the mailing list, I'm embarrassed to say that I still > can't find it. If this information hasn't been stored, I imagine > mri_surf2surf can calculate it for me. Would this be the best way? > thanks, > mishkin > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
