Hi, I have a similar questionto the one listed below. After I edit brainmask.mgz and wm.mgz, my understanding was that I could run autorecon2-wm
and would not have to run autorecon2-pial because -wm will run everything else through the end of -autorecon2. However, if brainmask.mgz is run at the end of autorecon1, don't I need to run autorecon1 again, since wm or contol point edits would alter the brainmask?? Thanks for help, Helen ____________________________________________________________ "Hi Dana, you can do autorecon2-cp and it will do both things (the wm comes after it in the stream anyway) cheers Bruce On Tue, 9 Mar 2010, Dana W. Moore wrote: > Hello everyone, > > There is an image that needs white matter edits (editing voxels) as > well as control points. I know the two commands I need to re-run are > autorecon2-cp and autorecon2-wm. Can I do both kinds of edits and > somehow combine the -cp and -wm commands, or do I need to do the > control points first, re-run, and then do further white matter edits? > > Thanks, > Dana > -- Helen L. Keefe Mental Health Clinical Research Center Image Processing Lab University of Iowa 319-353-8586 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
