Hi Hannah, I'm not sure I know what you mean. Do you have a label on each subject? If so it will look for it in the subjects label directory. As for the second issue, that sounds like a bug. If you want to send us the subject directory we'll fix it.
cheers Bruce On Fri, 19 Mar 2010, Bruehl, Hannah wrote: > > Hi there, > > I have got 2 questions: > > 1) is there way to use mris_anatomical_stats to map back the label I have > created onto all the subjects in my directory simultaneously? I know there is > the "--subject" option but how do I then specify the directory for each > individual subject? > > 2) I tried to do this for an individual subject and got the following error > message: > > [LOE5145MAC:~] bruehh01% mris_anatomical_stats -l lh.CingulateKGvsPTSD.label > -t lh.thickness -b -f 66/stats/lh.CingulateKGvsPTSD.stats 66 lh > limiting computations to label lh.CingulateKGvsPTSD.label. > using thickness file lh.thickness. > reading volume /Users/bruehh01/Borderline_2/subjects/66/mri/wm.mgz... > reading input surface > /Users/bruehh01/Borderline_2/subjects/66/surf/lh.white... > reading input pial surface > /Users/bruehh01/Borderline_2/subjects/66/surf/lh.pial... > reading input white surface > /Users/bruehh01/Borderline_2/subjects/66/surf/lh.white... > /Users/bruehh01/Borderline_2/subjects/66/label/lh.CingulateKGvsPTSD.label > /Users/bruehh01/Borderline_2/subjects/66/label/lh.CingulateKGvsPTSD.label > > table columns are: > number of vertices > total surface area (mm^2) > total gray matter volume (mm^3) > average cortical thickness +- standard deviation (mm) > integrated rectified mean curvature > integrated rectified Gaussian curvature > folding index > intrinsic curvature index > structure name > > Bus error > > Can anyone help? > > Thanks and greetz, > > hannah _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
