Hi Indika, you should be able to do this using the aparc+aseg.mgz volume and mri_binarize. What command line did you use and can you give us an example of the "spilling"?
cheers, Bruce On Thu, 1 Apr 2010, Walimuni, Indika S wrote: > Hi FreeSurfer List > Is their any way that I can generate cortical and sub-cortical volume masks by using the surfaces generated by FreeSurfer. If I can could anyone give me the proper command. Apparently, The masks I already generated using mri_binarize command, are little bigger and spilling into the surrounding. > Thank you in advance, > Truly, > Indika Walimuni > Research Associate > University of Texas Health Science Center > Houston, TX. > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
