Hi Jonathan, can you try running recon-all with -make all?
cheers Bruce On Thu, 22 Apr 2010, Jonathan Winkle wrote: > Hey Mailing List, > > I'm getting the following error in the smooth2 stage of reconstruction: > > #-------------------------------------------- > #...@# Smooth2 lh Wed Apr 21 17:22:08 EDT 2010 > > mris_smooth -n 3 -nw ../surf/lh.white ../surf/lh.smoothwm > > /mindhive/desimonelab/structurals/monkeys/muli/scripts > smoothing for 3 iterations > MRISread(../surf/lh.white): could not open file > No such file or directory > mris_smooth: could not read surface file ../surf/lh.white > No such file or directory > Linux ba2 2.6.31-20-generic #57-Ubuntu SMP Mon Feb 8 09:02:26 UTC 2010 > x86_64 GNU/Linux > > recon-all exited with ERRORS at Wed Apr 21 17:22:08 EDT 2010 > ----------------------------------------------- > > The lh.white file has not been created yet, so I'm not sure why it's > trying to access it. Any help would be much appreciated. Thanks! > > -Jonathan > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
