Hello Freesurfer List Gurus, We're at the stage of making white matter edits and adding control points, but one of my subjects recently produced the following error:
zcat: /study/midus/data/mri/processed/freesurfer/subject057/mri/wm.seg.mgz: unexpected end of file mghRead(/study/midus/data/mri/processed/freesurfer/subject057/mri/wm.seg.mgz): could not read 65536 bytes at slice 90 mri_segment: could not read file wm.seg.mgz to preserve edits Linux cashew.keck.waisman.wisc.edu 2.6.18-164.6.1.el5 #1 SMP Tue Nov 3 23:11:58 EST 2009 i686 i686 i386 GNU/Linux recon-all exited with ERRORS at Tue May 18 21:04:35 CDT 2010 Any suggestions on how to fix? This subject has already had a great deal of hands on processing in terms of adding control points, editing the white matter, and running recon_all to fix, with multiple passes to get it as perfect as possible. Also, I've TRIED just rerunning recon-all on it, but the errors persist. (Each time, we're running the following command: recon-all -autorecon2-cp -autorecon3 -subjid subject057) Any and all info on how to salvage this subject's data without have to start from scratch will be much appreciated! Thank you. Stacey Schaefer --------------------------------------------------- Stacey M. Schaefer, Ph.D. Waisman Laboratory for Brain Imaging and Behavior University of Wisconsin - Madison 1500 Highland Ave Rm T127 Madison, WI 53705 Waisman Phone: 608-263-9321 Laboratory for Affective Neuroscience UW Psychology Dept, Brogden 1202 W Johnson St Rm 392 Madison, WI 53706 Brogden Phone: 608-262-9937 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
