Hi All,

Our group recently scanned subjects with two different scanners in order
to determine how reliable FreeSurfer comparisons between the two scanners
are. After putting each session through the regular cross-sectional
Freesurfer pipeline, we noticed that there is much greater variability
between the two scanners when we compare structures in the right
hemisphere than in the left. Is there any FreeSurfer related reason for
this?

Also, we are currently running each subject through the longitudinal
pipeline (i.e. Scanner 1 as TP1, Scanner 2 as TP2). Is there any reason to
think that this will help reduce the variability seen between the two
scanners?

Thanks in advance for any help.

- Tyler Blazey



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