Mike is correct. Thanks Mike! doug
Michael Waskom wrote: > Hi Heidi, > > You can use mri_segstats on the surface. You can either use the > --label option or, if you have a lot of labels, you can merge them > into an annotation with mris_label2annot and then use the --annot > option to extract from all at once (values are extracted from each > region separately; this just might save some time/typing). > > Note that the file you're extracting from (the one after the --i flag) > must be stored as a surface. > > Best, > Mike > > On Mon, Aug 16, 2010 at 10:46 AM, > <[email protected] > <mailto:[email protected]>> wrote: > > Hi, > > Last year, I have been working for four months with David Salat > and so, I have learnt a lot, including the dt_recon command. > From David, I also learnt to use mri_segstats command in order to > get minimum p-values for each label in my volume. > However, now I have performed cortical thickness analyses. Based > on the results on the inflated surface, I created labels and > deprojected them to native space, to get the statistics. > Now, I also would like to have the minimum p-value of each label > in the cortical thickness analyses. However, the mri_segstats > command is not suitable for surfaces. > Do you have any idea how I can extract these minimim p-values? > > Thank you very much. > > Best > Heidi. > > * > > * > > *Heidi Jacobs * > /PhD student > Faculty of Health, Medicine and Life Sciences/ > /School for Mental Health and Neurosciences/ > /Alzheimer Center Limburg/ > /Division Cognitive Neuropsychiatry and Clinical Neurosciences/ > [email protected] <mailto:[email protected]> > _www.maastrichtuniversity.nl <http://www.maastrichtuniversity.nl/> > > Dr. Tanslaan 12, 6229 ET Maastricht > P.O. Box 616, 6200 MD Maastricht, The Netherlands > T +31 43 38 84 126 F +31 43 38 84 092 > > > *Please consider your environmental responsibility before > printing this e-mail.* > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
