Does /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self.nii exist?
Jason Webster wrote: > > > I'm trying to run a retinotopic analysis with the following commands: > > mkanalysis-sess -analysis retino-lh -TR 2 -retinotopy 40 -paradigm > rtopy.para -funcstem fmcpr.sm5.self -surface self lh -mcextreg > -runlistfile retRuns -fwhm 0 > > selxavg3-sess -analysis retino-lh -s somesubject -df sessdir > > and am getting the error: > > >> >> >> >> >> >> >> > /Applications/freesurfer/fsfast/toolbox/fast_selxavg3.m > > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > $Id: fast_selxavg3.m,v 1.88.2.2 2010/07/16 15:31:24 greve Exp $ > > outtop = > /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data > > Extension format = nii > > ERROR: cannot determine format of > > /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self > > ERROR: attempting to read > > /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self > > ------------------------------------------ > > ERROR: fast_selxavg3() failed\n > > > It looks like this might have something to do with analysis.info > <http://analysis.info> > > ... > funcstem fmcpr.sm5.self > ... > RawSpace surface self lh > ... > > Should the funcstem have gotten '.lh' or should this be worked out by > getana or selxavg3-sess? > > > Thanks, > > > ~Jason > > > > > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
