Hi Prapti, Normally you can use aparcstats2table exactly as you would do with thickness, given that the column corresponding to thickness values in the tablefile that you produced with your mris_anatomical_stats are indeed lgi values (i.e. you used mris_anatomical_stats -t pial_lgi -f lh.lgi.stats, which allows you to use: aparcstats2table -- subjects ...... --hemi ?h --measure thickness --tablefile ?h.lgi.stats).
Let me know if you encounter any problem, Marie On 16 nov. 10, at 04:28, Prapti Gautam wrote: > dear all, > > I am trying to extract the mean values of lgi from the cortex from a > group of subjects. I found the following command useful in > extracting for one subject: > > mris_anatomical_stats -mgz -f lh.lgi.stats -b -a aparc.annot -c > lh.lgi.annot.ctab -t pial_lgi $SUBJECT lh > > However, I have a lot of subjects I wish to extract this for and I > was wondering if there is a command that will extract these values > similar to the aparcstats2table command (where all the subjects and > the mean values for each parcellation is in one output file) > > thanks, > > Prapti > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
