And how did you reorient to run FS on the anats? Krishna Srihasam wrote: > Hi, > > Yes. We took the anatomicals with the monkey in sphinx position in a > stereotax. > > Rgds, > krsihna > > -----Original Message----- > From: Douglas N Greve [mailto:[email protected]] > Sent: Tuesday, December 07, 2010 2:32 PM > To: Krishna Srihasam > Cc: [email protected] > Subject: Re: [Freesurfer] aligning functionals to anatomicals > > How did you re-orient your anatomicals? Was the monkey in the sphinx > position? > > doug > > Krishna Srihasam wrote: > >> Hi, >> >> >> >> I have a question regarding overlay of functional activations on a >> freesurfer map. After much work, I flattened my monkey brain. But, I >> just realized that the input volume , which I used to generate the >> flat maps, had orientation set to LIA. I want to over lay my >> functional activations, which are in RAS orientation on them. One >> way would be to realign all functional data into LIA orientation and >> then analyze the data and then simply use spmregister-see or >> fslregister-sess to register. Is there any simpler way? >> >> >> >> My functionals are 65x85x56 for each slice. I tried using flirt to get >> the alignment matrix. But, it is failing badly.. Any ideas would be >> welcome.. >> >> >> >> Regards, >> >> krishna >> >> >> >> ---------------------------------------------------------------------- >> -- >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [email protected] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Partners Compliance > HelpLine at http://www.partners.org/complianceline . If the e-mail was sent > to you in error but does not contain patient information, please contact the > sender and properly dispose of the e-mail. > > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
