Hi, I have ran recon-all and got the Hippocampal volumes I desire from the aseg.stats file. However, I have manually refined some of the volumes using the tkmedit segmentation tool brushes and I now need to extract the revised volume estimates.
I believe I can run 'mri_segstats' to obtain the revised volume, this seems to run the full segmentation process again, would this be the recommended way of obtaining the revised volumes or if I'm only interested in the Hippocampal volume is there a more precise command I could run to extract only this from my revised aseg.mgz segmentation file? Many Thanks John McLean ******************************************************************************************************************** This message may contain confidential information. If you are not the intended recipient please inform the sender that you have received the message in error before deleting it. Please do not disclose, copy or distribute information in this e-mail or take any action in reliance on its contents: to do so is strictly prohibited and may be unlawful. Thank you for your co-operation. NHSmail is the secure email and directory service available for all NHS staff in England and Scotland NHSmail is approved for exchanging patient data and other sensitive information with NHSmail and GSi recipients NHSmail provides an email address for your career in the NHS and can be accessed anywhere For more information and to find out how you can switch, visit www.connectingforhealth.nhs.uk/nhsmail ********************************************************************************************************************
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