yep, stable 5 doug
Adam Nitenson wrote: > Hi Doug, > > Is the fsnr.dat a Stable 5 feature? I'm working on Stable 4, and > cannot find this file in my analysis directory, > > e.g. > /cluster/roffman/users/folate_subjects/FB0011099AA/bold/fmcsm5_functionals > > ...or anywhere else in the subject directory. All I see are the fsnr.nii > overlay files. > > -Adam > > > >> There should be an fsnr.dat file in the fsfast analysis directory with >> the value that you want. >> >> doug >> >> On 12/20/10 1:30 PM, Adam Nitenson wrote: >> >>> Hello Freesurfers, >>> >>> We are beginning to perform QC on our subjects and want to look at >>> signal to noise ratio. I've taken a look at the fsnr.nii overlay >>> files, but we would like to be able to calculate a whole surface >>> value for SNR for each functional run of each subject, so that we can >>> exclude runs if that SNR values falls below our designated threshold. >>> Is there a way to accomplish this? >>> >>> Thanks, >>> >>> >>> Adam Nitenson, B.S. >>> Brain Genomics Lab >>> Massachusetts General Hospital >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> > > > Adam Nitenson, B.S. > Brain Genomics Lab > Massachusetts General Hospital > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
