yea, this is a bug. I've just fixed it. doug
Michael Waskom wrote: > Hey developers, > > It seems as if the --cortex and --mask flags for mri_vol2surf are not > doing anything. E.g., if I use the exact same command line: > > mri_vol2surf --hemi rh --o rh.w-cortex.nii.gz --out_type niigz --reg > register.dat --reshape --projfrac-avg 0 1 .1 --mov cope2.nii.gz > --cortex > > With and without "--cortex" and then diff the output, they are > identical. When you load the overlay in tksurfer, the medial wall has > values that are not 0. > > Here's my bugr data: > > FREESURFER_HOME: /software/Freesurfer/5.0.0 > > Build stamp: freesurfer-Linux-centos5_x86_64-stable-pub-v5.0.0 > > Debian version: squeeze/sid > > Kernel info: Linux 2.6.31-22-generic x86_64 > > > Best, > Mike > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
