You can try loading your volume as both the targ and mov, rotating it to where you want, saving the registration, then using mri_vol2vol to apply the transformation. See if that works.
doug Rosa Lafer-Sousa wrote: > Hi, > > I need to manually rotate and reslice an anatomical volume. I am > pretty sure this can be done using tkregister (or tkregister2?), but > the documentation is limited. If tkregister is the way to go, what is > the command line I need to enter pull up my volume (e.g > raw_rawavg.mgz) in the GUI? If tkregister is not the way to go, > what is? > > thanks! > Rosa > > > ---- > > Rosa Lafer-Sousa > Lab Manager, Bevil Conway > Wellesley College - Neuroscience > 106 Central Street > Wellesley, MA > > 210-325-3185 > [email protected] <mailto:[email protected]> > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
