It's dying when creating the output directory. Does the output dir get created? If not, do you have write permissions to that dir?
doug Allie Rosen wrote: > Hi, > > I am accessing my subject directory on a network attached drive. When > I run mri glmfit it segfaults. However, it works if the subject > directory is on my own computer. Do you have any way to do this with > the subject directory on the network drive? > > Below is a sample output. > > Thanks, > Allie > > Caduceus:~/ammonis/fsSubjects/subjects_archive> mri_glmfit --y > lh.smoothed.thickness.6.mgz --fsgd GDF1.txt doss --glmdir > lh.smoothed.thickness.6.glmdir --surf fsaverage lh --C ContrastAge.txt > gdfReadHeader: reading GDF1.txt > INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. > Continuous Variable Means (all subjects) > 0 Age 40.0625 > 1 PCS 9.875 > 2 Neuro 17.8125 > 3 Extro 30 > 4 Open 28.875 > 5 Agree 32.4375 > 6 Consc 34.625 > Class Means of each Continuous Variable > 1 Control 40.0625 9.8750 17.8125 30.0000 28.8750 32.4375 34.6250 > INFO: gd2mtx_method is doss > Reading source surface > /media/AMMONIS/fsSubjects/subjects_archive/fsaverage/surf/lh.white > reading group avg surface area 822 cm^2 from file > Reading in average area > /media/AMMONIS/fsSubjects/subjects_archive/fsaverage/surf/lh.white.avg.area.mgh > Number of vertices 163842 > Number of faces 327680 > Total area 65416.648438 > AvgVtxArea 0.399267 > AvgVtxDist 0.721953 > StdVtxDist 0.195470 > > $Id: mri_glmfit.c,v 1.138.2.15 2009/07/27 17:43:10 greve Exp $ > cwd /media/AMMONIS/fsSubjects/subjects_archive > cmdline mri_glmfit --y lh.smoothed.thickness.6.mgz --fsgd GDF1.txt > doss --glmdir lh.smoothed.thickness.6.glmdir --surf fsaverage lh --C > ContrastAge.txt > sysname Linux > hostname Caduceus > machine x86_64 > user arosen > FixVertexAreaFlag = 1 > UseMaskWithSmoothing 1 > OneSampleGroupMean 0 > y > /media/AMMONIS/fsSubjects/subjects_archive/lh.smoothed.thickness.6.mgz > logyflag 0 > usedti 0 > FSGD GDF1.txt > glmdir lh.smoothed.thickness.6.glmdir > IllCondOK 0 > DoFFx 0 > Creating output directory lh.smoothed.thickness.6.glmdir > Segmentation fault > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
