Hi Freesurfers,
When conducting ROI analyses in Stable 5, is there a way to generate
a mean functional baseline offset value within the ROI which can be
used to help calculate percent signal change? This would correspond
to the value from row 4 in the output file generated by
roisummary-sess in Stable 4.
Thanks,
Adam
PS: Here are examples of the commands I've used in Stable 5 to generate
ROI Data:
funcroi-config -analysis SIRP_Stable5 -label LH_16MTH_7v1_DLPFC -roi
MTH_7vFix_DLPFC.roicfg -contrast Cond7vFix -sign abs -thresh 1.3
funcroi-sess -roi MTH_7vFix_DLPFC.roicfg -sf
/cluster/roffman/users/Stable5_PerRun/Subject_Files/16_PreScan_Genotyped_MTH
funcroi-table-sess -roi MTH_7vFix_DLPFC.roicfg -sf
/cluster/roffman/users/Stable5_PerRun/Subject_Files/16_PreScan_Genotyped_MTH
-c Cond7vFix -o /cluster/roffman/users/Stable5_PerRun/DLPFC_ROI_7vFix_MTH
Adam Nitenson, B.S.
Brain Genomics Lab
Massachusetts General Hospital
niten...@nmr.mgh.harvard.edu
Phone: 617-643-3215
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