Scott Burns wrote: > Doug - > > Thanks for the help. A few more questions... > > 1. Is it worth re-preprocessing with -sliceorder siemens? > depends. If you have an even number of slices, then your slice order is wrong, and you should delete the preprocessed data and start over. If you have an odd number, then you're ok. > 2. Does mkanalysis-sess -fwhm 8 -stc siemens -surface fsaverage lh ... not do > preprocessing but just uses those specs to build the string for the filename > search? Or will it do preprocessing but not actually recompute anything > because there's no update needed (assuming I've recently run preproc-sess)? > It will run the preprocessing (preproc-sess), but preproc-sess will not reanalyze anything unless an update is needed.
doug > scott > > > On Apr 10, 2011, at 10:40 PM, Douglas Greve wrote: > > >> Hi Scott, the problem is that you specified the "funcstem" as a full >> filename with extension "-funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz" should >> be "-funcstem fmcpr.odd.sm8.fsaverage.lh" (the "stem" is a file name without >> the extension, so no .nii.gz). I don't think that you need to actually spec >> the funcstem explicitly. It looks like it will do the right thing if you >> just spec "-fwhm 8 -stc odd". Also, if you're using data from a Siemens >> scanner than it is probably better to use "-stc siemens" instead of "-stc >> odd". Using "-stc siemens" will properly handle interleaved slices >> regardless of whether you have an odd or even number of slices. >> >> doug >> >> On 4/10/11 7:20 PM, sbu...@nmr.mgh.harvard.edu wrote: >> >>> Doug -- here's the output from the terminal.... >>> >>> kerryave:functionals $ selxavg3-sess -s ya24 -d >>> /cluster/kuperberg/SemPrMM/MRI/functionals/ -analysis ya.ATLLoc.spm.sm8.lh >>> -debug |& tee debug.log >>> set echo = 1 ; >>> breaksw >>> breaksw >>> >>> end >>> end >>> while ( $#argv != 0 ) >>> while ( 0 != 0 ) >>> goto parse_args_return ; >>> goto parse_args_return >>> >>> foreach grp ( $grpdefs ) >>> foreach grp ( ) >>> >>> goto check_params ; >>> goto check_params >>> >>> if ( $#SessList == 0 ) then >>> if ( 1 == 0 ) then >>> >>> if ( $#SearchPathList == 0 ) then >>> if ( 1 == 0 ) then >>> >>> goto check_params_return ; >>> goto check_params_return >>> >>> >>> set UniqueList = ( ) ; >>> set UniqueList = ( ) >>> foreach d ( $SearchPathList ) >>> foreach d ( /cluster/kuperberg/SemPrMM/MRI/functionals/ ) >>> if ( ! -e $d ) then >>> if ( ! -e /cluster/kuperberg/SemPrMM/MRI/functionals/ ) then >>> >>> set IsUnique = 1 ; >>> set IsUnique = 1 >>> foreach u ( $UniqueList ) >>> foreach u ( ) >>> if ( $IsUnique ) set UniqueList = ( $UniqueList $d ) ; >>> if ( 1 ) set UniqueList = ( /cluster/kuperberg/SemPrMM/MRI/functionals/ ) >>> set UniqueList = ( /cluster/kuperberg/SemPrMM/MRI/functionals/ ) >>> end >>> end >>> >>> set SearchPathList = ( $UniqueList ) ; >>> set SearchPathList = ( /cluster/kuperberg/SemPrMM/MRI/functionals/ ) >>> >>> set errs = 0 ; >>> set errs = 0 >>> >>> >>> set SessPath = ( ) ; >>> set SessPath = ( ) >>> foreach sess ( $SessList ) >>> foreach sess ( ya24 ) >>> set tmp = ( ) ; >>> set tmp = ( ) >>> foreach d ( $SearchPathList ) >>> foreach d ( /cluster/kuperberg/SemPrMM/MRI/functionals/ ) >>> set stst = $d/$sess >>> set stst = /cluster/kuperberg/SemPrMM/MRI/functionals//ya24 >>> if ( -d $stst ) then >>> if ( -d /cluster/kuperberg/SemPrMM/MRI/functionals//ya24 ) then >>> if ( ! -r $stst ) then >>> if ( ! -r /cluster/kuperberg/SemPrMM/MRI/functionals//ya24 ) then >>> pushd $stst> /dev/null ; >>> pushd /cluster/kuperberg/SemPrMM/MRI/functionals//ya24 >>> set tmp = ( $tmp `$PWDCMD` ) ; >>> set tmp = ( `$PWDCMD` ) >>> pwd >>> popd> /dev/null ; >>> popd >>> endif >>> endif >>> end >>> end >>> set nfound = ( $#tmp ) ; >>> set nfound = ( 1 ) >>> if ( $nfound == 0 ) then >>> if ( 1 == 0 ) then >>> if ( $nfound> 1 ) then >>> if ( 1> 1 ) then >>> set SessPath = ( $SessPath $tmp ) ; >>> set SessPath = ( /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 ) >>> end >>> end >>> >>> >>> set UniqueList = ( ) ; >>> set UniqueList = ( ) >>> foreach s ( $SessPath ) >>> foreach s ( /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 ) >>> set IsUnique = 1 ; >>> set IsUnique = 1 >>> foreach u ( $UniqueList ) >>> foreach u ( ) >>> if ( ! $IsUnique&& ! $AllowRedundant ) then >>> if ( ! 1&& ! 0 ) then >>> >>> set UniqueList = ( $UniqueList $s ) ; >>> set UniqueList = ( /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 ) >>> endif >>> endif >>> end >>> end >>> >>> >>> echo $SessPath >>> echo /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 >>> >>> exit $errs ; >>> exit 0 >>> set echo = 1 ; >>> breaksw >>> breaksw >>> >>> end >>> end >>> while ( $#argv != 0 ) >>> while ( 0 != 0 ) >>> >>> goto parse_args_return ; >>> goto parse_args_return >>> >>> goto check_params ; >>> goto check_params >>> >>> if ( $#SessList == 0 ) then >>> if ( 1 == 0 ) then >>> if ( $#analysis == 0&& $flacfile == 0 ) then >>> if ( 1 == 0&& == 0 ) then >>> if ( $#analysis != 0 ) then >>> if ( 1 != 0 ) then >>> if ( ! -d $analysis ) then >>> if ( ! -d ya.ATLLoc.spm.sm8.lh ) then >>> if ( ! -e $analysis/analysis.info ) then >>> if ( ! -e ya.ATLLoc.spm.sm8.lh/analysis.info ) then >>> endif >>> endif >>> if ( $#flacfile != 0 ) then >>> if ( 0 != 0 ) then >>> if ( $perrun&& $jkrun ) then >>> if ( 0&& 0 ) then >>> >>> if ( $UseOctave ) then >>> if ( 0 ) then >>> >>> goto check_params_return ; >>> goto check_params_return >>> >>> set StudyDir = `pwd` ; >>> set StudyDir = `pwd` >>> pwd >>> >>> if ( $#analysis ) then >>> if ( 1 ) then >>> >>> set analysisname = $analysis >>> set analysisname = ya.ATLLoc.spm.sm8.lh >>> set fsd = `getana -a $analysis -t fsd` ; >>> set fsd = `getana -a $analysis -t fsd` >>> getana -a ya.ATLLoc.spm.sm8.lh -t fsd >>> set IsNative = `getana -a $analysis -t IsNative` >>> set IsNative = `getana -a $analysis -t IsNative` >>> getana -a ya.ATLLoc.spm.sm8.lh -t IsNative >>> set IsSurface = `getana -a $analysis -t IsSurface` >>> set IsSurface = `getana -a $analysis -t IsSurface` >>> getana -a ya.ATLLoc.spm.sm8.lh -t IsSurface >>> if ( $IsSurface ) then >>> if ( 1 ) then >>> set subject = `getana -a $analysis -t subject` >>> set subject = `getana -a $analysis -t subject` >>> getana -a ya.ATLLoc.spm.sm8.lh -t subject >>> set hemi = `getana -a $analysis -t hemi` >>> set hemi = `getana -a $analysis -t hemi` >>> getana -a ya.ATLLoc.spm.sm8.lh -t hemi >>> echo "Surface data $subject $hemi" >>> echo Surface data fsaverage lh >>> Surface data fsaverage lh >>> endif >>> endif >>> set dt = `getana -a $analysis -t designtype` >>> set dt = `getana -a $analysis -t designtype` >>> getana -a ya.ATLLoc.spm.sm8.lh -t designtype >>> if ( $dt == "abblocked" ) set RequireContrasts = 0 ; >>> if ( event-related == abblocked ) set RequireContrasts = 0 >>> if ( $dt == "retinotopy" ) set RequireContrasts = 0 ; >>> if ( event-related == retinotopy ) set RequireContrasts = 0 >>> set contrasts = `getana -a $analysis -t contrasts` >>> set contrasts = `getana -a $analysis -t contrasts` >>> getana -a ya.ATLLoc.spm.sm8.lh -t contrasts >>> if ( $#contrasts == 0&& $RequireContrasts ) then >>> if ( 7 == 0&& 1 ) then >>> endif >>> endif >>> >>> >>> if ( $#LF == 0 ) then >>> if ( 0 == 0 ) then >>> if ( $nolog ) then >>> if ( 0 ) then >>> >>> if ( $#OutParent == 0 ) then >>> if ( 0 == 0 ) then >>> set logdir = `pwd`/log ; >>> set logdir = `pwd`/log >>> pwd >>> else >>> else >>> mkdir -p $logdir >>> mkdir -p /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log >>> if ( ! -e $logdir ) then >>> if ( ! -e /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log ) then >>> >>> set LF = $logdir/selxavg3-sess-$fsd-$analysis-$DateStr.log >>> set LF = >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> if ( -e $LF ) mv $LF $LF.old >>> if ( -e >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> ) mv >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log.old >>> endif >>> endif >>> endif >>> endif >>> endif >>> endif >>> echo "--------------------------------------------------------------" >>> echo -------------------------------------------------------------- >>> -------------------------------------------------------------- >>> echo "selxavg3-sess logfile is $LF" >>> echo selxavg3-sess logfile is >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> selxavg3-sess logfile is >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> echo "--------------------------------------------------------------" >>> echo -------------------------------------------------------------- >>> -------------------------------------------------------------- >>> >>> echo "selxavg3-sess log file">> $LF >>> echo selxavg3-sess log file >>> echo $0>> $LF >>> echo /usr/local/freesurfer/stable5_0_0/fsfast/bin/selxavg3-sess >>> echo $inputargs>> $LF >>> echo -s ya24 -d /cluster/kuperberg/SemPrMM/MRI/functionals/ -analysis >>> ya.ATLLoc.spm.sm8.lh -debug >>> echo $VERSION>> $LF >>> echo $Id: selxavg3-sess,v 1.52.2.5 2010/08/25 19:07:37 greve Exp $ >>> id>> $LF >>> id >>> pwd>> $LF >>> pwd >>> uname -a>> $LF >>> uname -a >>> date>> $LF >>> date >>> >>> set StartTime = `date` ; >>> set StartTime = `date` >>> date >>> >>> if ( $SaveRes || $SaveResUnwhitened ) set MatlabSaveRes = 1 ; >>> if ( 0 || 0 ) set MatlabSaveRes = 1 >>> >>> >>> set funcstemspec = `getana -a $analysis -t funcstem-specified` >>> set funcstemspec = `getana -a $analysis -t funcstem-specified` >>> getana -a ya.ATLLoc.spm.sm8.lh -t funcstem-specified >>> if ( $funcstemspec ) set DoPreProc = 0 ; >>> if ( 1 ) set DoPreProc = 0 >>> set DoPreProc = 0 >>> >>> >>> if ( $DoPreProc ) then >>> if ( 0 ) then >>> >>> if ( $#MLF == 0 ) set MLF = /tmp/selxavg3-sess-$$.m >>> if ( 0 == 0 ) set MLF = /tmp/selxavg3-sess-1405.m >>> set MLF = /tmp/selxavg3-sess-1405.m >>> rm -f $MLF >>> rm -f /tmp/selxavg3-sess-1405.m >>> echo "% `date` ">> $MLF >>> echo % `date` >>> date >>> echo "% `pwd` ">> $MLF >>> echo % `pwd` >>> pwd >>> echo "% $flacfile $analysis ">> $MLF >>> echo % ya.ATLLoc.spm.sm8.lh >>> echo " ">> $MLF >>> echo >>> echo " ">> $MLF >>> echo >>> >>> set okfile = /tmp/selxavg3-sess-$$.ok >>> set okfile = /tmp/selxavg3-sess-1405.ok >>> rm -f $okfile >>> rm -f /tmp/selxavg3-sess-1405.ok >>> >>> set parname = `getana -a $analysis -t parname` >>> set parname = `getana -a $analysis -t parname` >>> getana -a ya.ATLLoc.spm.sm8.lh -t parname >>> set funcstem = `getana -a $analysis -t funcstem` >>> set funcstem = `getana -a $analysis -t funcstem` >>> getana -a ya.ATLLoc.spm.sm8.lh -t funcstem >>> set rlf = `getana -a $analysis -t runlistfile` >>> set rlf = `getana -a $analysis -t runlistfile` >>> getana -a ya.ATLLoc.spm.sm8.lh -t runlistfile >>> set ConList = `getana -a $analysis -t contrasts` >>> set ConList = `getana -a $analysis -t contrasts` >>> getana -a ya.ATLLoc.spm.sm8.lh -t contrasts >>> >>> >>> @ nthsess = 0 ; >>> @ nthsess = 0 >>> @ nprocs = 0 ; >>> @ nprocs = 0 >>> foreach sess ( $SessList ) >>> foreach sess ( /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 ) >>> @ nthsess = $nthsess + 1 ; >>> @ nthsess = 0 + 1 >>> set sessbase = `basename $sess` ; >>> set sessbase = `basename $sess` >>> basename /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 >>> set sessdir = `dirname $sess` ; >>> set sessdir = `dirname $sess` >>> dirname /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 >>> >>> echo "-------------------------------------------" |& tee -a $LF >>> echo ------------------------------------------- >>> tee -a >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> ------------------------------------------- >>> echo "$sess " |& tee -a $LF >>> echo /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 >>> tee -a >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 >>> date |& tee -a $LF >>> date >>> tee -a >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> Sun Apr 10 19:19:09 EDT 2011 >>> >>> if ( ! -d $sess ) then >>> if ( ! -d /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 ) then >>> >>> set funcdir = $sess/$fsd >>> set funcdir = /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc >>> set anadir = $sess/$fsd/$analysisname >>> set anadir = >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh >>> if ( $#OutParent == 0 ) then >>> if ( 0 == 0 ) then >>> set anadir = $sess/$fsd/$analysisname >>> set anadir = >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh >>> else >>> else >>> echo anadir = $anadir | tee -a $LF >>> echo anadir = >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh >>> tee -a >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >>> anadir = >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh >>> >>> set DoGLMFit = 0 ; >>> set DoGLMFit = 0 >>> if ( $Overwrite || $perrun ) set DoGLMFit = 1 ; >>> if ( 0 || 0 ) set DoGLMFit = 1 >>> set beta = `stem2fname $anadir/beta` >>> set beta = `stem2fname $anadir/beta` >>> stem2fname >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh/beta >>> if ( $status ) set DoGLMFit = 1 ; >>> if ( 0 ) set DoGLMFit = 1 >>> if ( $DoGLMFit == 0 ) then >>> if ( 0 == 0 ) then >>> >>> set deplist = ( $analysis/analysis.info ) ; >>> set deplist = ( ya.ATLLoc.spm.sm8.lh/analysis.info ) >>> set RunList = ( `getrunlist $sess/$fsd $rlf` ) ; >>> set RunList = ( `getrunlist $sess/$fsd $rlf` ) >>> getrunlist /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc rlf >>> set funclist = ( ) >>> set funclist = ( ) >>> foreach Run ( $RunList ) >>> foreach Run ( 007 ) >>> set funcstempath = $sess/$fsd/$Run/$funcstem ; >>> set funcstempath = >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>> set func = `stem2fname $funcstempath` ; >>> set func = `stem2fname $funcstempath` >>> stem2fname >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>> if ( $status ) then >>> if ( 1 ) then >>> echo "ERROR: cannot find $funcstempath" >>> echo ERROR: cannot find >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>> ERROR: cannot find >>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>> exit 1 ; >>> exit 1 >>> >>> >>> >>>> Scott, can you run >>>> >>>> selxavg3-sess -analysis ya.ATLLoc.spm.sm8.lh -s ya24 -d >>>> /cluster/kuperberg/SemPrMM/MRI/functionals/ -debug |& tee debug.log >>>> >>>> and send me debug.log? >>>> >>>> doug >>>> >>>> >>>> Scott Burns wrote: >>>> >>>>> Freesurfers -- >>>>> >>>>> Here's the output of my terminal... >>>>> >>>>> kerryave:functionals $ cd /cluster/kuperberg/SemPrMM/MRI/functionals/ >>>>> kerryave:functionals $ rm >>>>> /cluster/kuperberg/SemPrMM/MRI/functionals/ya24/scripts/atlloc_fs-stats.log >>>>> kerryave:functionals $ selxavg3-sess -analysis ya.ATLLoc.spm.sm8.lh -s >>>>> ya24 -d /cluster/kuperberg/SemPrMM/MRI/functionals/ -svres -nolog >>>>> >>>>> Surface data fsaverage lh >>>>> -------------------------------------------------------------- >>>>> selxavg3-sess logfile is /dev/null >>>>> -------------------------------------------------------------- >>>>> ------------------------------------------- >>>>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 >>>>> Fri Apr 8 16:47:17 EDT 2011 >>>>> anadir = >>>>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh >>>>> ERROR: cannot find >>>>> /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>>>> kerryave:functionals $ ls -l >>>>> ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>>>> -rw-rw-r-- 1 sburns lingua 83660305 Apr 7 07:56 >>>>> ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz >>>>> >>>>> Does anyone know what's going on? Here's my analysis.info >>>>> <http://analysis.info> for that analysis... >>>>> >>>>> kerryave:functionals $ cd ya.ATLLoc.spm.sm8.lh/ >>>>> kerryave:ya.ATLLoc.spm.sm8.lh $ cat analysis.info<http://analysis.info> >>>>> # FSBUILD freesurfer-Linux-centos4_x86_64-stable-v5.0.0-20110319 >>>>> # MKAVERSION $Id: mkanalysis-sess,v 1.49.2.8 2011/01/18 17:08:22 greve >>>>> Exp $ >>>>> # MKACMD /usr/local/freesurfer/stable5_0_0/fsfast/bin/mkanalysis-sess >>>>> -analysis ya.ATLLoc.spm.sm8.lh -fsd ATLLoc -rlf rlf -p atlloc.par >>>>> -spmhrf 0 -refeventdur 2 -event-related -TR 2 -nconditions 4 -mcextreg >>>>> -hpf 128 -funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz -surface >>>>> fsaverage lh -force >>>>> # DATE Fri Apr 8 08:31:01 EDT 2011 >>>>> >>>>> analysis ya.ATLLoc.spm.sm8.lh >>>>> mcstem fmcpr >>>>> funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz >>>>> fsd ATLLoc >>>>> runlistfile rlf >>>>> TR 2 >>>>> RegDOF 6 >>>>> RawSpace surface fsaverage lh >>>>> mask brain >>>>> RawFWHM 0 >>>>> RawSTC none >>>>> inorm 100 >>>>> acfbins 30 >>>>> fixacf 1 >>>>> acffwhm 20 >>>>> acfsvd 0 >>>>> designtype event-related >>>>> nskip 0 >>>>> polyfit 2 >>>>> HPFCutoffHz 128 >>>>> nconditions 4 >>>>> parname atlloc.par >>>>> RefEventDur 2 >>>>> timewindow 40.000000 >>>>> prestim 0 >>>>> TER 0.050000 >>>>> spmhrf 0 >>>>> stimulusdelay 0 >>>>> Condition 1 Condition01 >>>>> Condition 2 Condition02 >>>>> Condition 3 Condition03 >>>>> Condition 4 Condition04 >>>>> nuisreg mcprextreg 3 >>>>> >>>>> Thanks for the help. >>>>> >>>>> Scott Burns >>>>> Kuperberg Lab >>>>> Martinos Center for Biomedical Imaging >>>>> sbu...@nmr.mgh.harvard.edu<mailto:sbu...@nmr.mgh.harvard.edu> >>>>> >>>>> The information in this e-mail is intended only for the person to whom >>>>> it is addressed. If you believe this e-mail was sent to you in error >>>>> and the e-mail contains patient information, please contact the >>>>> Partners Compliance HelpLine at http://www.partners.org/complianceline >>>>> <http://www.partners.org/complianceline> . If the e-mail was sent to >>>>> you in error but does not contain patient information, please contact >>>>> the sender and properly dispose of the e-mail. >>>>> >>>>> >>>>> >>>>> >>>>> ------------------------------------------------------------------------ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> >>>> >>>> >>>> >> > > > > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
