Hello there, We have a bunch of files that had freesurfer run already, simply using the command "recon-all -s subjid -all", in order to get the cortical thickness in fs average space, should we have to re-run all of them again using "recon-all -s subjid -qcache -measure thickness", or we may apply some transformation reported already to transform the thickness from subject space to fs average space ? Does anyone have any suggestion on how to do that? Thanks. Aize
> Subject: Re: Cortical thickness in the template space > From: ni...@nmr.mgh.harvard.edu > To: caoa...@hotmail.com > CC: freesurfer@nmr.mgh.harvard.edu > Date: Tue, 8 Mar 2011 16:50:41 -0500 > > Aize, > > run: > > recon-all -s subjid -qcache -measure thickness > > and this will create files in the /surf dir which sample the thickness > data at different smoothing levels onto the fsaverage subject space. > > n. > > On Wed, 2011-03-09 at 05:46 +0800, caoaize wrote: > > > > Hello, > > > > We try to look at the two group difference of cortical thickness, but > > I need the lh(or rh).thickness file, which reported in template space > > (FS average space), but after run recon-all -all, what I have is only > > lh.thickness, or rh.thickness, which is in subject's space. Would > > someone point me where or how I can get them? Thanks. > > > > Aize > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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