Hi, Bruce, I realized that I should use mris_sphere, mris_register and mrisp_paint tools, but I have no idea on how to set the parameters of these commands. May you or somebody else give me some help? Thanks. Aize
> Date: Fri, 15 Apr 2011 10:47:08 -0400 > From: fis...@nmr.mgh.harvard.edu > To: caoa...@hotmail.com > CC: ni...@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Cortical thickness in the template space > > Hi Aize, > > yes, that should do it. > > cheers, > Bruce > On Fri, 15 Apr 2011, caoaize wrote: > > > > > Hello there, We have a bunch of files that had freesurfer run already, > > simply using the command "recon-all -s subjid -all", in order to get the > > cortical thickness in fs average space, should we have to re-run all of > > them again using "recon-all -s subjid -qcache -measure thickness", or we > > may apply some transformation reported already to transform the thickness > > from subject space to fs average space ? Does anyone have any suggestion on > > how to do that? Thanks. Aize > > > >> Subject: Re: Cortical thickness in the template space > >> From: ni...@nmr.mgh.harvard.edu > >> To: caoa...@hotmail.com > >> CC: freesurfer@nmr.mgh.harvard.edu > >> Date: Tue, 8 Mar 2011 16:50:41 -0500 > >> > >> Aize, > >> > >> run: > >> > >> recon-all -s subjid -qcache -measure thickness > >> > >> and this will create files in the /surf dir which sample the thickness > >> data at different smoothing levels onto the fsaverage subject space. > >> > >> n. > >> > >> On Wed, 2011-03-09 at 05:46 +0800, caoaize wrote: > >>> > >>> Hello, > >>> > >>> We try to look at the two group difference of cortical thickness, but > >>> I need the lh(or rh).thickness file, which reported in template space > >>> (FS average space), but after run recon-all -all, what I have is only > >>> lh.thickness, or rh.thickness, which is in subject's space. Would > >>> someone point me where or how I can get them? Thanks. > >>> > >>> Aize > >> > >> > >> > >> The information in this e-mail is intended only for the person to whom it > >> is > >> addressed. If you believe this e-mail was sent to you in error and the > >> e-mail > >> contains patient information, please contact the Partners Compliance > >> HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to you in > >> error > >> but does not contain patient information, please contact the sender and > >> properly > >> dispose of the e-mail. > >> > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
