Hi Matt,

I think you can use -t <xfm>, but it almost never fails for us. Do you 
want to send me an example of a failure? I did make some tweaks to it that 
might help. Or we can send you a newer version and you can try it out 
yourself
Bruce


On Sun, 17 Apr 2011, Matt Glasser 
wrote:

> Is it possible to convert an .xfm to an .lta or alternatively to initialize
> mri_em_register with an .xfm that one has manually generated?  It is not
> doing a very good job for me.
>
>
>
> Thanks,
>
>
> Matt.
>
>
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