Can you email me one of the wm.mgz volume that fails? On Wed, 1 Jun 2011, von Polier, Georg Ferdinand Anto wrote:
> Hi, > > using FS 5.1 now, I encountered two problems: > > 1. when I try to start freeview on my personal laptop, this errors appears: > > [georg@localhost ~]$ freeview > freeview.bin: error while loading shared libraries: libXss.so.1: cannot open > shared object file: No such file or directory > > However, libXss.so.1 is installed on my system running linux (Fedora 15). Do > you habe any idea? > > > 2. Running recon-all with -all flag on a cluster (Linux CentOs 5.6) the > stream finishes with errors repeatedly showing this message: > > #@# WM Segmentation Tue May 31 12:36:00 CEST 2011 > > mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt > > znzTAGskip: tag=544043625, failed to calloc 1952413696 bytes! > > > $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ > cwd /rwthfs/rz/cluster/work/gg855262/subjects_AN/4550/mri > cmdline mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count > wm255.txt > sysname Linux > > input wm.mgz > frame 0 > nErode3d 0 > nErode2d 0 > output wm255.mgz > Binarizing based on threshold > min 255 > max 255 > binval 1 > binvalnot 0 > Cannot allocate memory > > recon-all -s 4550 exited with ERRORS at Tue May 31 12:36:01 CEST 2011 > > > ------------------------------------------------------------------------------ > | Execution of Batch-Request stopped at Tue May 31 12:36:01 CEST 2011 > | peak memory value: 2.386G > | real time used: 04:58:38 > > I did allocate 4 GB of memory and did not face this error when using FS 5.0 > or FS 5.1-beta-release with same settings. > > Any recommendations? > Thanks, Georg > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
